HL_9BDL_107

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

9BDL|1|A28S|A|4910, 9BDL|1|A28S|A|4911, 9BDL|1|A28S|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_107 not in the Motif Atlas

Geometric match to HL_3SKL_006

Geometric discrepancy: 0.3275

The information below is about HL_3SKL_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9BDL|1|A28S|C|4906
9BDL|1|A28S|G|4907
9BDL|1|A28S|G|4908
9BDL|1|A28S|A|4909
9BDL|1|A28S|A|4910
9BDL|1|A28S|A|4911
9BDL|1|A28S|G|4912
9BDL|1|A28S|G|4913
9BDL|1|A28S|G|4914
9BDL|1|A28S|G|4915

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL16

Large ribosomal subunit protein uL13