HL_9BDN_003

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

9BDN|1|A18S|U|160, 9BDN|1|A18S|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.179

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9BDN|1|A18S|G|156
9BDN|1|A18S|U|157
9BDN|1|A18S|A|158
9BDN|1|A18S|A|159
9BDN|1|A18S|U|160
9BDN|1|A18S|U|161
9BDN|1|A18S|C|162

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS06

40S ribosomal protein S6

Chain AS24

40S ribosomal protein S24