HL_9BDN_009

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9BDN|1|A18S|C|450, 9BDN|1|A18S|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_009 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.0938

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9BDN|1|A18S|C|441
9BDN|1|A18S|C|442
9BDN|1|A18S|U|443
9BDN|1|A18S|G|444
9BDN|1|A18S|A|445
9BDN|1|A18S|G|446
9BDN|1|A18S|A|447
9BDN|1|A18S|A|448
9BDN|1|A18S|A|449
9BDN|1|A18S|C|450
9BDN|1|A18S|G|451
9BDN|1|A18S|G|452

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS06

40S ribosomal protein S6

Chain AS08

40S ribosomal protein S8

Chain AS24

40S ribosomal protein S24