HL_9BDN_010

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9BDN|1|A18S|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_010 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1286

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

9BDN|1|A18S|C|462
9BDN|1|A18S|C|463
9BDN|1|A18S|A|464
9BDN|1|A18S|A|465
9BDN|1|A18S|G|466
9BDN|1|A18S|G|467

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL23

60S ribosomal protein L23

Chain AS06

40S ribosomal protein S6