HL_9BDN_019
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDN_019 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.1447
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9BDN|1|A18S|A|957
9BDN|1|A18S|G|958
9BDN|1|A18S|G|959
9BDN|1|A18S|U|960
9BDN|1|A18S|G|961
9BDN|1|A18S|A|962
9BDN|1|A18S|A|963
9BDN|1|A18S|A|964
9BDN|1|A18S|U|965
9BDN|1|A18S|U|966
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS05
- Ribosomal protein S5
- Chain AS14
- Small ribosomal subunit protein uS11
- Chain ETRN
- Transfer RNA; tRNA
- Chain MRNA
- mRNA
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