HL_9BDN_023

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_023 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.1032

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9BDN|1|A18S|G|1141
9BDN|1|A18S|G|1142
9BDN|1|A18S|A|1143
9BDN|1|A18S|A|1144
9BDN|1|A18S|A|1145
9BDN|1|A18S|C|1146

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS02

40S ribosomal protein S2

Chain AS22

40S ribosomal protein S15a

Chain AS26

eS26