HL_9BDN_028

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9BDN|1|A18S|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_028 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1583

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9BDN|1|A18S|G|1366
9BDN|1|A18S|U|1367
9BDN|1|A18S|U|1368
9BDN|1|A18S|A|1369
9BDN|1|A18S|A|1370
9BDN|1|A18S|U|1371
9BDN|1|A18S|U|1372
9BDN|1|A18S|C|1373

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS17

40S ribosomal protein S17