HL_9BDN_029

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCG

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_029 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1753

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9BDN|1|A18S|C|1416
9BDN|1|A18S|C|1417
9BDN|1|A18S|C|1423
9BDN|1|A18S|G|1424

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS16

Small ribosomal subunit protein uS9

Chain AS19

Small ribosomal subunit protein eS19