HL_9BDN_032
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 9BDN|1|A18S|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDN_032 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2226
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9BDN|1|A18S|A|1614
9BDN|1|A18S|U|1615
9BDN|1|A18S|U|1616
9BDN|1|A18S|G|1617
9BDN|1|A18S|C|1618
9BDN|1|A18S|A|1619
9BDN|1|A18S|A|1620
9BDN|1|A18S|U|1621
9BDN|1|A18S|U|1622
9BDN|1|A18S|A|1623
9BDN|1|A18S|U|1624
9BDN|1|A18S|U|1625
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS15
- 40S ribosomal protein S15
- Chain AS18
- 40S ribosomal protein S18
- Chain AS19
- Small ribosomal subunit protein eS19
- Chain AS29
- 40S ribosomal protein S29
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