HL_9BDN_038

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9BDN|1|A28S|G|134, 9BDN|1|A28S|G|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_038 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1621

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9BDN|1|A28S|C|131
9BDN|1|A28S|G|132
9BDN|1|A28S|C|133
9BDN|1|A28S|G|134
9BDN|1|A28S|G|135
9BDN|1|A28S|C|136
9BDN|1|A28S|G|137

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL15

60S ribosomal protein L15

Chain AL35

60S ribosomal protein L35

Chain AL37

60S ribosomal protein L37