HL_9BDN_041

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

9BDN|1|A28S|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_041 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1539

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

9BDN|1|A28S|G|230
9BDN|1|A28S|U|231
9BDN|1|A28S|G|232
9BDN|1|A28S|U|233
9BDN|1|A28S|G|234
9BDN|1|A28S|A|235
9BDN|1|A28S|G|236
9BDN|1|A28S|G|237
9BDN|1|A28S|C|238

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL04

60S ribosomal protein L4

Chain AL26

60S ribosomal protein L26