HL_9BDN_063

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

9BDN|1|A28S|A|1891, 9BDN|1|A28S|A|1892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_063 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.1559

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9BDN|1|A28S|G|1886
9BDN|1|A28S|G|1887
9BDN|1|A28S|A|1888
9BDN|1|A28S|U|1889
9BDN|1|A28S|G|1890
9BDN|1|A28S|A|1891
9BDN|1|A28S|A|1892
9BDN|1|A28S|C|1893

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL07

60S ribosomal protein L7

Chain AL32

Large ribosomal subunit protein eL32

Chain AL33

60S ribosomal protein L35a