HL_9BDN_074

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

9BDN|1|A28S|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_074 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.1458

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9BDN|1|A28S|G|2624
9BDN|1|A28S|U|2625
9BDN|1|A28S|U|2626
9BDN|1|A28S|C|2627
9BDN|1|A28S|U|2628
9BDN|1|A28S|C|2629
9BDN|1|A28S|U|2630
9BDN|1|A28S|U|2631
9BDN|1|A28S|U|2632

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AL22

Large ribosomal subunit protein eL22