HL_9BDN_082

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUGC

Length

5 nucleotides

Bulged bases

9BDN|1|A28S|G|3615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_082 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.2755

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9BDN|1|A28S|G|3614
9BDN|1|A28S|G|3615
9BDN|1|A28S|U|3616
9BDN|1|A28S|G|3617
9BDN|1|A28S|C|3618

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL19

60S ribosomal protein L19

Chain AL24

Ribosomal protein L24