HL_9BDN_086

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

9BDN|1|A28S|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_086 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1691

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9BDN|1|A28S|G|3757
9BDN|1|A28S|U|3758
9BDN|1|A28S|A|3759
9BDN|1|A28S|A|3760
9BDN|1|A28S|C|3761
9BDN|1|A28S|U|3762
9BDN|1|A28S|A|3763
9BDN|1|A28S|U|3764
9BDN|1|A28S|G|3765
9BDN|1|A28S|A|3766
9BDN|1|A28S|C|3767

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain ANG

Angiogenin

Chain PTRN

Transfer RNA; tRNA