HL_9BDN_088

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9BDN|1|A28S|A|3876, 9BDN|1|A28S|A|3877, 9BDN|1|A28S|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_088 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0711

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9BDN|1|A28S|G|3873
9BDN|1|A28S|G|3874
9BDN|1|A28S|G|3875
9BDN|1|A28S|A|3876
9BDN|1|A28S|A|3877
9BDN|1|A28S|C|3878
9BDN|1|A28S|G|3879
9BDN|1|A28S|G|3880
9BDN|1|A28S|G|3881
9BDN|1|A28S|C|3882

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL32

Large ribosomal subunit protein eL32