HL_9BDN_090

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCGAGGGCUCUC

Length

13 nucleotides

Bulged bases

9BDN|1|A28S|G|4108

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_090 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.353

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

9BDN|1|A28S|G|4094
9BDN|1|A28S|G|4095
9BDN|1|A28S|C|4096
9BDN|1|A28S|G|4097
9BDN|1|A28S|A|4098
9BDN|1|A28S|G|4099
9BDN|1|A28S|G|4108
9BDN|1|A28S|G|4109
9BDN|1|A28S|C|4110
9BDN|1|A28S|U|4111
9BDN|1|A28S|C|4112
9BDN|1|A28S|U|4113
9BDN|1|A28S|C|4114

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL08

Large ribosomal subunit protein eL8

Chain AL34

60S ribosomal protein L34