HL_9BDN_100

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9BDN|1|A28S|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_100 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1184

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9BDN|1|A28S|A|4474
9BDN|1|A28S|G|4475
9BDN|1|A28S|C|4476
9BDN|1|A28S|A|4477
9BDN|1|A28S|G|4478
9BDN|1|A28S|A|4479
9BDN|1|A28S|A|4480
9BDN|1|A28S|U|4481

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9

Chain AL40

Large ribosomal subunit protein eL40