3D structure

PDB id
9BDN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with angiogenin and tRNAAla
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CACUUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9BDN_112 not in the Motif Atlas
Homologous match to HL_5TBW_075
Geometric discrepancy: 0.1843
The information below is about HL_5TBW_075
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_22523.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
13

Unit IDs

9BDN|1|A58S|C|107
9BDN|1|A58S|A|108
9BDN|1|A58S|C|109
9BDN|1|A58S|U|110
9BDN|1|A58S|U|111
9BDN|1|A58S|G|112

Current chains

Chain A58S
5.8S rRNA

Nearby chains

Chain A28S
Large subunit ribosomal RNA; LSU rRNA
Chain AL25
Large ribosomal subunit protein uL23
Chain AL37
60S ribosomal protein L37
Chain AL39
60S ribosomal protein L39

Coloring options:


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