HL_9BDN_117
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDN_117 not in the Motif Atlas
- Homologous match to HL_5UD5_002
- Geometric discrepancy: 0.3649
- The information below is about HL_5UD5_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9BDN|1|ETRN|G|31
9BDN|1|ETRN|C|32
9BDN|1|ETRN|U|33
9BDN|1|ETRN|C|34
9BDN|1|ETRN|A|35
9BDN|1|ETRN|U|36
9BDN|1|ETRN|A|37
9BDN|1|ETRN|A|38
9BDN|1|ETRN|C|39
Current chains
- Chain ETRN
- tRNAfMet
Nearby chains
- Chain A18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain AS05
- Ribosomal protein S5
- Chain AS14
- Small ribosomal subunit protein uS11
- Chain AS28
- 40S ribosomal protein S28
- Chain MRNA
- mRNA
- Chain PTRN
- Transfer RNA; tRNA
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