HL_9BDN_119

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

9BDN|1|PTRN|G|18, 9BDN|1|PTRN|G|19, 9BDN|1|PTRN|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_119 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.1639

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|PTRN|C|13
9BDN|1|PTRN|A|14
9BDN|1|PTRN|G|15
9BDN|1|PTRN|C|16
9BDN|1|PTRN|C|17
9BDN|1|PTRN|U|17|||A
9BDN|1|PTRN|G|18
9BDN|1|PTRN|G|19
9BDN|1|PTRN|U|20
9BDN|1|PTRN|A|21
9BDN|1|PTRN|G|22

Current chains

Chain PTRN

tRNAfMet

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL11

60S ribosomal protein L11

Chain AL42

eL42