HL_9BDN_123

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_123 not in the Motif Atlas

Homologous match to HL_5HR7_005

Geometric discrepancy: 0.4763

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.3

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

9BDN|1|TIRN|C|31
9BDN|1|TIRN|U|32
9BDN|1|TIRN|U|38
9BDN|1|TIRN|G|39

Current chains

Chain TIRN

tRNAAla

Nearby chains

Chain ANG

Angiogenin