HL_9BDN_129
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDN_129 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1478
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
9BDN|1|A5S|A|32
9BDN|1|A5S|U|33
9BDN|1|A5S|C|34
9BDN|1|A5S|U|35
9BDN|1|A5S|C|36
9BDN|1|A5S|G|37
9BDN|1|A5S|U|38
9BDN|1|A5S|C|39
9BDN|1|A5S|U|40
9BDN|1|A5S|G|41
9BDN|1|A5S|A|42
9BDN|1|A5S|U|43
9BDN|1|A5S|C|44
9BDN|1|A5S|U|45
Current chains
- Chain A5S
- 5S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL05
- 60S ribosomal protein L5
- Chain AL11
- 60S ribosomal protein L11
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