HL_9BDN_130
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUCAAAUCC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDN_130 not in the Motif Atlas
- Homologous match to HL_4TUE_218
- Geometric discrepancy: 0.2346
- The information below is about HL_4TUE_218
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_23827.2
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9BDN|1|PTRN|G|52
9BDN|1|PTRN|G|53
9BDN|1|PTRN|U|54
9BDN|1|PTRN|U|55
9BDN|1|PTRN|C|56
9BDN|1|PTRN|A|57
9BDN|1|PTRN|A|58
9BDN|1|PTRN|A|59
9BDN|1|PTRN|U|60
9BDN|1|PTRN|C|61
9BDN|1|PTRN|C|62
Current chains
- Chain PTRN
- tRNAfMet
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL11
- 60S ribosomal protein L11
- Chain AL42
- eL42
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