HL_9BDP_031

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

9BDP|1|A18S|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_031 not in the Motif Atlas

Homologous match to HL_8C3A_224

Geometric discrepancy: 0.2245

The information below is about HL_8C3A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

9BDP|1|A18S|A|1614
9BDP|1|A18S|U|1615
9BDP|1|A18S|U|1616
9BDP|1|A18S|G|1617
9BDP|1|A18S|C|1618
9BDP|1|A18S|A|1619
9BDP|1|A18S|A|1620
9BDP|1|A18S|U|1621
9BDP|1|A18S|U|1622
9BDP|1|A18S|A|1623
9BDP|1|A18S|U|1624
9BDP|1|A18S|U|1625

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS15

40S ribosomal protein S15

Chain AS18

40S ribosomal protein S18

Chain AS29

40S ribosomal protein S29