HL_9BDP_033

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUGAACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_033 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3017

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

9BDP|1|A18S|G|1846
9BDP|1|A18S|G|1847
9BDP|1|A18S|U|1848
9BDP|1|A18S|G|1849
9BDP|1|A18S|A|1850
9BDP|1|A18S|A|1851
9BDP|1|A18S|C|1852
9BDP|1|A18S|C|1853

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL41

eL41

Chain AS14

Small ribosomal subunit protein uS11