HL_9BDP_041

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

9BDP|1|A28S|G|294, 9BDP|1|A28S|A|295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_041 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.2311

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9BDP|1|A28S|C|289
9BDP|1|A28S|U|290
9BDP|1|A28S|U|291
9BDP|1|A28S|G|292
9BDP|1|A28S|G|293
9BDP|1|A28S|G|294
9BDP|1|A28S|A|295
9BDP|1|A28S|A|296
9BDP|1|A28S|U|297
9BDP|1|A28S|G|298

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL13

Large ribosomal subunit protein eL13

Chain AL15

60S ribosomal protein L15

Chain AL28

60S ribosomal protein L27a

Chain AL42

eL42