HL_9BDP_047

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

9BDP|1|A28S|C|967

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_047 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2101

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9BDP|1|A28S|C|962
9BDP|1|A28S|G|963
9BDP|1|A28S|A|964
9BDP|1|A28S|G|965
9BDP|1|A28S|A|966
9BDP|1|A28S|C|967
9BDP|1|A28S|C|968
9BDP|1|A28S|C|969
9BDP|1|A28S|G|970

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL06

60S ribosomal protein L6

Chain AL07

60S ribosomal protein L7