HL_9BDP_050

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

9BDP|1|A28S|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_050 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1047

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9BDP|1|A28S|U|1317
9BDP|1|A28S|C|1318
9BDP|1|A28S|U|1319
9BDP|1|A28S|U|1320
9BDP|1|A28S|G|1321
9BDP|1|A28S|A|1322
9BDP|1|A28S|A|1323
9BDP|1|A28S|A|1324
9BDP|1|A28S|C|1325
9BDP|1|A28S|A|1326

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL28

60S ribosomal protein L27a

Chain AL32

Large ribosomal subunit protein eL32