HL_9BDP_058

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9BDP|1|A28S|C|1676, 9BDP|1|A28S|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_058 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.4308

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9BDP|1|A28S|C|1675
9BDP|1|A28S|C|1676
9BDP|1|A28S|U|1677
9BDP|1|A28S|C|1678
9BDP|1|A28S|A|1679
9BDP|1|A28S|G|1680

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL28

60S ribosomal protein L27a

Chain AL29

Large ribosomal subunit protein eL29

Chain AL42

eL42