HL_9BDP_085
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 9BDP|1|A28S|A|3760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDP_085 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.165
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9BDP|1|A28S|G|3757
9BDP|1|A28S|U|3758
9BDP|1|A28S|A|3759
9BDP|1|A28S|A|3760
9BDP|1|A28S|C|3761
9BDP|1|A28S|U|3762
9BDP|1|A28S|A|3763
9BDP|1|A28S|U|3764
9BDP|1|A28S|G|3765
9BDP|1|A28S|A|3766
9BDP|1|A28S|C|3767
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain ANG
- Angiogenin
- Chain PTRN
- Transfer RNA; tRNA
Coloring options: