HL_9BDP_092

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

9BDP|1|A28S|A|4214, 9BDP|1|A28S|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_092 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1524

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

9BDP|1|A28S|U|4210
9BDP|1|A28S|C|4211
9BDP|1|A28S|A|4212
9BDP|1|A28S|A|4213
9BDP|1|A28S|A|4214
9BDP|1|A28S|C|4215
9BDP|1|A28S|G|4216
9BDP|1|A28S|G|4217
9BDP|1|A28S|U|4218
9BDP|1|A28S|A|4219
9BDP|1|A28S|A|4220
9BDP|1|A28S|C|4221
9BDP|1|A28S|G|4222

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL21

60S ribosomal protein L21

Chain AL29

Large ribosomal subunit protein eL29