HL_9BDP_098

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_098 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1738

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9BDP|1|A28S|C|4417
9BDP|1|A28S|G|4418
9BDP|1|A28S|U|4419
9BDP|1|A28S|U|4420
9BDP|1|A28S|C|4421
9BDP|1|A28S|A|4422
9BDP|1|A28S|U|4423
9BDP|1|A28S|A|4424
9BDP|1|A28S|G|4425

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL40

Large ribosomal subunit protein eL40