HL_9BDP_099

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

9BDP|1|A28S|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_099 not in the Motif Atlas

Geometric match to HL_4V9F_019

Geometric discrepancy: 0.3328

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9BDP|1|A28S|A|4473
9BDP|1|A28S|A|4474
9BDP|1|A28S|G|4475
9BDP|1|A28S|C|4476
9BDP|1|A28S|A|4477
9BDP|1|A28S|G|4478
9BDP|1|A28S|A|4479
9BDP|1|A28S|A|4480
9BDP|1|A28S|U|4481
9BDP|1|A28S|U|4482

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9

Chain AL40

Large ribosomal subunit protein eL40