HL_9BDP_129
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 9BDP|1|A28S|A|39, 9BDP|1|A28S|A|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDP_129 not in the Motif Atlas
- Homologous match to HL_8P9A_113
- Geometric discrepancy: 0.1276
- The information below is about HL_8P9A_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9BDP|1|A28S|U|37
9BDP|1|A28S|A|38
9BDP|1|A28S|A|39
9BDP|1|A28S|G|40
9BDP|1|A28S|C|41
9BDP|1|A28S|A|42
9BDP|1|A28S|U|43
9BDP|1|A28S|A|44
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL13
- Large ribosomal subunit protein eL13
- Chain AL15
- 60S ribosomal protein L15
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL42
- eL42
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