HL_9BH5_005

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UACGAUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3049

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9BH5|1|A5|U|197
9BH5|1|A5|A|198
9BH5|1|A5|C|199
9BH5|1|A5|G|200
9BH5|1|A5|A|201
9BH5|1|A5|U|202
9BH5|1|A5|U|203
9BH5|1|A5|G|204

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CY

Large ribosomal subunit protein uL24

Chain Ce

Large ribosomal subunit protein eL32