RNA 3D Hub //

9BH5 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9BH5_0011/A5/37:44No text annotation
homologous
HL_8C3A_001
NA
HL_9BH5_0021/A5/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_9BH5_0031/A5/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_9BH5_0041/A5/131:135No text annotation
homologous
HL_5TBW_004
NA
HL_9BH5_0051/A5/197:204T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_9BH5_0061/A5/216:220No text annotation
homologous
HL_8C3A_006
NA
HL_9BH5_0071/A5/224:232T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_9BH5_0081/A5/284:293T-loop related
homologous
HL_8P9A_120
HL_63894.3
HL_9BH5_0091/A5/309:318Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_9BH5_0101/A5/363:368GNRA
homologous
HL_8C3A_010
NA
HL_9BH5_0111/A5/388:393GNRA
homologous
HL_8C3A_011
NA
HL_9BH5_0131/A5/669:678T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_9BH5_1091/A5/716:723No text annotation
geometric
HL_5J7L_151
NA
HL_9BH5_0151/A5/737:742GNRA
homologous
HL_8C3A_016
NA
HL_9BH5_0161/A5/753:759No text annotation
geometric
HL_5J7L_018
NA
HL_9BH5_0171/A5/820:823Mini UNCG related
geometric
HL_6AJK_001
HL_12626.2
HL_9BH5_0181/A5/899:904GNRA
homologous
HL_5TBW_019
NA
HL_9BH5_0191/A5/931:940No text annotation
homologous
HL_5TBW_020
NA
HL_9BH5_0201/A5/965:973No text annotation
homologous
HL_8C3A_021
NA
HL_9BH5_0211/A5/1013:1018Externally structured
homologous
HL_8C3A_022
NA
HL_9BH5_0231/A5/1130:1137No text annotation
geometric
HL_5TBW_024
NA
HL_9BH5_0241/A5/1178:1184GNRA
homologous
HL_8C3A_025
NA
HL_9BH5_0251/A5/1200:1207No text annotation
homologous
HL_8C3A_026
NA
HL_9BH5_0281/A5/1468:1473GNRA
homologous
HL_8C3A_030
NA
HL_9BH5_0291/A5/1527:1535T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_9BH5_0301/A5/1571:1577Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_9BH5_0311/A5/1609:1614GNRA variation
homologous
HL_8C3A_033
NA
HL_9BH5_0331/A5/1675:1684No text annotation
homologous
HL_8C3A_035
NA
HL_9BH5_0341/A5/1728:1733GNRA
homologous
HL_5TBW_036
NA
HL_9BH5_0351/A5/1772:1782tRNA D-loop
geometric
HL_5WWT_001
HL_45175.1
HL_9BH5_0361/A5/1812:1818No text annotation
geometric
HL_5HR7_005
HL_50006.5
HL_9BH5_0381/A5/1937:1944No text annotation
homologous
HL_8C3A_041
NA
HL_9BH5_0391/A5/1955:1961GNRA
homologous
HL_5TBW_042
NA
HL_9BH5_0401/A5/2016:2021UNCG
homologous
HL_8C3A_043
NA
HL_9BH5_0421/A5/2214:2218No text annotation
geometric
HL_7RQB_044
NA
HL_9BH5_0431/A5/2239:2249No text annotation
homologous
HL_5TBW_046
NA
HL_9BH5_0441/A5/2268:2273GNRA
homologous
HL_8C3A_047
NA
HL_9BH5_0451/A5/2323:2328GNRA
geometric
HL_2ZZM_003
HL_34789.5
HL_9BH5_0461/A5/2356:2366No text annotation
homologous
HL_8C3A_049
NA
HL_9BH5_0471/A5/2396:2402Mini UNCG
geometric
HL_5T16_002
HL_12626.2
HL_9BH5_0481/A5/2472:2481No text annotation
homologous
HL_8C3A_051
NA
HL_9BH5_0511/A5/2728:2736No text annotation
homologous
HL_8C3A_055
NA
HL_9BH5_0521/A5/2745:2757No text annotation
homologous
HL_8C3A_056
NA
HL_9BH5_0531/A5/2785:2793No text annotation
homologous
HL_8C3A_057
NA
HL_9BH5_0541/A5/2805:2812Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_9BH5_0551/A5/2836:2844No text annotation
homologous
HL_8C3A_059
NA
HL_9BH5_0561/A5/2856:2861GNRA
homologous
HL_8C3A_060
NA
HL_9BH5_0571/A5/2888:2896Pseudoknot geometry
homologous
HL_5TBW_060
NA
HL_9BH5_0581/A5/2952:2960No text annotation
homologous
HL_8C3A_062
NA
HL_9BH5_0591/A5/3009:3016No text annotation
homologous
HL_8C3A_063
NA
HL_9BH5_0601/A5/3032:3038No text annotation
homologous
HL_5TBW_063
NA
HL_9BH5_0611/A5/3075:3080GNRA
homologous
HL_8C3A_065
NA
HL_9BH5_0621/A5/3138:3143GNRA
homologous
HL_5TBW_065
NA
HL_9BH5_0631/A5/3181:3186Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_9BH5_0641/A5/3223:3237No text annotation
homologous
HL_8C3A_068
NA
HL_9BH5_0651/A5/3305:3310GNRA
geometric
HL_5B2P_001
HL_34789.5
HL_9BH5_0671/A5/3414:3422No text annotation
homologous
HL_5TBW_070
NA
HL_9BH5_1101/A7/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_9BH5_0691/A7/36:41No text annotation
homologous
HL_8C3A_073
NA
HL_9BH5_0701/A7/86:91GNRA
homologous
HL_5TBW_186
NA
HL_9BH5_1111/A8/47:56Pseudoknot with intercalation
homologous
HL_8C3A_229
NA
HL_9BH5_0721/A8/106:110No text annotation
geometric
HL_6D12_001
HL_89167.3
HL_9BH5_0731/A8/120:125Pseudoknot geometry with 3' bulge
geometric
HL_5NDI_002
HL_49081.1
HL_9BH5_0741/B2/8:18No text annotation
homologous
HL_8C3A_192
NA
HL_9BH5_0761/B2/138:144GNRA related
homologous
HL_8C3A_194
NA
HL_9BH5_0781/B2/227:234T-loop with 1 bulged base
homologous
HL_8C3A_197
NA
HL_9BH5_0791/B2/310:318GNRA related
homologous
HL_8C3A_199
NA
HL_9BH5_0801/B2/348:353No text annotation
homologous
HL_4V88_194
NA
HL_9BH5_0811/B2/373:384No text annotation
homologous
HL_4V88_195
NA
HL_9BH5_0821/B2/394:399UNCG
homologous
HL_8C3A_202
NA
HL_9BH5_0841/B2/497:507No text annotation
geometric
HL_4UYK_001
HL_14063.2
HL_9BH5_0851/B2/545:550GNRA variation
homologous
HL_8C3A_206
NA
HL_9BH5_0861/B2/732:740No text annotation
homologous
HL_4V88_203
NA
HL_9BH5_0871/B2/745:750No text annotation
homologous
HL_4V88_204
NA
HL_9BH5_0881/B2/865:874No text annotation
homologous
HL_8C3A_211
NA
HL_9BH5_0891/B2/902:907GNRA
homologous
HL_4V88_207
NA
HL_9BH5_0901/B2/962:972No text annotation
homologous
HL_4V88_208
NA
HL_9BH5_0911/B2/1043:1048GNRA
homologous
HL_4V88_210
NA
HL_9BH5_0921/B2/1080:1085GNRA
homologous
HL_8C3A_216
NA
HL_9BH5_0931/B2/1147:1156No text annotation
homologous
HL_4V88_212
NA
HL_9BH5_1121/B2/1197:1206GNRA with extra near cWW
homologous
HL_8P9A_216
HL_98423.4
HL_9BH5_0951/B2/1255:1260GNRA
homologous
HL_8C3A_219
NA
HL_9BH5_0961/B2/1268:1275T-loop related
homologous
HL_8C3A_220
NA
HL_9BH5_0971/B2/1317:1324No text annotation
geometric
HL_5TBW_021
NA
HL_9BH5_0981/B2/1354:1360GNRA
geometric
HL_6CZR_090
NA
HL_9BH5_0991/B2/1457:1462GNRA
homologous
HL_8C3A_223
NA
HL_9BH5_1001/B2/1506:1517No text annotation
homologous
HL_8C3A_224
NA
HL_9BH5_1011/B2/1550:1558No text annotation
homologous
HL_8C3A_225
NA
HL_9BH5_1021/B2/1732:1737GNRA variation
homologous
HL_8C3A_227
NA
HL_9BH5_1031/DA/13:22No text annotation
homologous
HL_3KFU_004
NA
HL_9BH5_1041/DA/31:39tRNA anticodon loop
homologous
HL_4TUE_034
NA
HL_9BH5_1051/DA/53:61T-loop with 2 stacked bulged bases
homologous
HL_5AXM_003
HL_33597.5
HL_9BH5_1061/DB/13:22No text annotation
geometric
HL_1N78_001
HL_78347.5
HL_9BH5_1071/DB/31:39tRNA anticodon loop
homologous
HL_7U2I_104
NA
HL_9BH5_1081/DB/53:61T-loop with 2 stacked bulged bases
homologous
HL_4YYE_003
HL_33597.5

Problematic loops

#loop idProblemSequence
HL_9BH5_012No text annotation
HL_9BH5_014No text annotation
HL_9BH5_022No text annotation
HL_9BH5_026No text annotation
HL_9BH5_027Mini UNCG
HL_9BH5_032No text annotation
HL_9BH5_037No text annotation
HL_9BH5_041No text annotation
HL_9BH5_049No text annotation
HL_9BH5_050No text annotation
HL_9BH5_066No text annotation
HL_9BH5_068No text annotation
HL_9BH5_071No text annotation
HL_9BH5_075No text annotation
HL_9BH5_077No text annotation
HL_9BH5_083No text annotation
HL_9BH5_094No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9BH5_2201/A5/1:3,
1/A8/151:153		No text annotation
IL_9BH5_0011/A5/6:7,
1/A8/146:148		Single bulged C
homologous
IL_5TBW_002
NA
IL_9BH5_0021/A5/12:14,
1/A8/140:141		Single bulged U
homologous
IL_8C3A_003
NA
IL_9BH5_0031/A5/16:18,
1/A8/136:138		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.5
IL_9BH5_0041/A5/26:27,
1/A5/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_9BH5_0051/A5/30:37,
1/A5/44:52		tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_9BH5_0061/A5/81:88,
1/A5/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_9BH5_0071/A5/118:121,
1/A5/150:151		Major groove platform; stack outside cWW
geometric
IL_1G1X_004
NA
IL_9BH5_2211/A5/118:122,
1/A5/145:151		Kink-turn with embedded cWW pair
geometric
IL_4V9F_108
IL_65996.1
IL_9BH5_0081/A5/121:122,
1/A5/145:150		No text annotation
geometric
IL_4V9F_009
IL_10396.2
IL_9BH5_0091/A5/125:127,
1/A5/139:142		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_9BH5_0101/A5/160:162,
1/A5/266:268		Isolated non-canonical cWW pair
geometric
IL_4E48_006
IL_01003.5
IL_9BH5_0111/A5/167:170,
1/A5/257:261		No text annotation
IL_9BH5_0131/A5/182:184,
1/A5/244:245		Single bulged A
geometric
IL_4V88_409
NA
IL_9BH5_0141/A5/192:194,
1/A5/207:208		Single bulged U
homologous
IL_8C3A_013
NA
IL_9BH5_0151/A5/343:345,
1/A8/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_9BH5_0161/A5/382:385,
1/A5/396:409		No text annotation
homologous
IL_5TBW_014
NA
IL_9BH5_0171/A5/410:416,
1/A8/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_9BH5_0181/A5/437:439,
1/A5/653:657		No text annotation
geometric
IL_8VTW_081
NA
IL_9BH5_0201/A5/534:535,
1/A5/599:601		No text annotation
IL_9BH5_0211/A5/536:539,
1/A5/595:598		Tandem non-canonical cWW pairs
geometric
IL_3TZR_003
IL_71194.3
IL_9BH5_0221/A5/540:542,
1/A5/592:594		No text annotation
geometric
IL_3ICQ_003
NA
IL_9BH5_0231/A5/543:544,
1/A5/588:591		Major groove minor groove platform; mini C-loop
geometric
IL_4LFB_025
IL_73108.3
IL_9BH5_0241/A5/546:548,
1/A5/584:586		Isolated non-canonical cWW pair
geometric
IL_3DIL_006
IL_01003.5
IL_9BH5_0251/A5/551:555,
1/A5/578:581		Tandem non-canonical cWW pairs
geometric
IL_205D_001
NA
IL_9BH5_0261/A5/555:556,
1/A5/576:578		Single bulged U
geometric
IL_5TBW_146
NA
IL_9BH5_0271/A5/692:694,
1/A5/852:854		Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_01003.5
IL_9BH5_0281/A5/698:700,
1/A5/846:848		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_9BH5_0291/A5/709:713,
1/A5/726:730		No text annotation
IL_9BH5_0301/A5/772:776,
1/A5/795:800		Triple sheared related
geometric
IL_4V9F_018
IL_51313.1
IL_9BH5_0311/A5/807:808,
1/A5/834:836		Single bulged A
homologous
IL_5TBW_024
NA
IL_9BH5_0321/A5/813:816,
1/A5/827:829		No text annotation
geometric
IL_8P9A_292
IL_15698.6
IL_9BH5_0331/A5/858:860,
1/A5/993:995		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_9BH5_0341/A5/860:864,
1/A5/986:993		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_9BH5_0351/A5/883:884,
1/A5/950:952		Single bulged A
geometric
IL_7A0S_016
IL_14190.3
IL_9BH5_0361/A5/888:893,
1/A5/910:916		Quadruple sheared
geometric
IL_3FTF_001
IL_29495.2
IL_9BH5_0371/A5/924:927,
1/A5/943:945		Major groove platform with extra cWW
homologous
IL_5TBW_031
NA
IL_9BH5_0381/A5/928:930,
1/A5/941:942		Single bulged U
homologous
IL_8C3A_035
NA
IL_9BH5_0391/A5/962:964,
1/A5/974:978		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_9BH5_0401/A5/1009:1011,
1/A5/1020:1022		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_9BH5_0411/A5/1024:1025,
1/A5/1163:1165		No text annotation
homologous
IL_8C3A_038
NA
IL_9BH5_0421/A5/1032:1035,
1/A5/1155:1156		No text annotation
IL_9BH5_0431/A5/1037:1039,
1/A5/1152:1153		Single bulged G
homologous
IL_8C3A_040
NA
IL_9BH5_0441/A5/1046:1051,
1/A5/1106:1111		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_9BH5_2221/A5/1046:1052,
1/A5/1104:1111		No text annotation
IL_9BH5_0451/A5/1051:1052,
1/A5/1104:1106		Minor groove platform
homologous
IL_8C3A_042
NA
IL_9BH5_0461/A5/1053:1058,
1/A5/1100:1103		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_9BH5_0471/A5/1060:1063,
1/A5/1095:1098		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_9BH5_0481/A5/1063:1065,
1/A5/1093:1095		Isolated non-canonical cWW pair
homologous
IL_5TBW_042
NA
IL_9BH5_0491/A5/1123:1124,
1/A5/1142:1144		Single bulged U
geometric
IL_5TBW_093
NA
IL_9BH5_0501/A5/1128:1130,
1/A5/1137:1138		Single bulged G
homologous
IL_8C3A_048
NA
IL_9BH5_0511/A5/1172:1174,
1/A5/1188:1190		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_9BH5_0531/A5/1219:1223,
1/A5/1380:1384		UAA/GAN
homologous
IL_8C3A_051
NA
IL_9BH5_0541/A5/1225:1232,
1/A5/1377:1378		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_9BH5_0551/A5/1232:1234,
1/A5/1376:1377		Single bulged U
geometric
IL_7RQB_038
NA
IL_9BH5_0561/A5/1239:1246,
1/A5/1366:1371		No text annotation
homologous
IL_8C3A_054
NA
IL_9BH5_0571/A5/1246:1257,
1/A5/1351:1366		No text annotation
geometric
IL_5TBW_052
NA
IL_9BH5_0581/A5/1259:1261,
1/A5/1348:1349		Single bulged U
homologous
IL_5TBW_053
NA
IL_9BH5_0591/A5/1441:1443,
1/A5/1493:1496		No text annotation
homologous
IL_8C3A_061
NA
IL_9BH5_0601/A5/1448:1451,
1/A5/1485:1488		Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_9BH5_0611/A5/1452:1459,
1/A5/1480:1484		Kink-turn
homologous
IL_8C3A_063
NA
IL_9BH5_0621/A5/1509:1515,
1/A5/2457:2462		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_9BH5_0631/A5/1566:1570,
1/A5/1578:1580		Minor groove platform
geometric
IL_4LFB_037
IL_03866.1
IL_9BH5_0641/A5/1597:1601,
1/A5/1661:1666		UAA/GAN
homologous
IL_8C3A_067
NA
IL_9BH5_0651/A5/1628:1630,
1/A5/1651:1653		No text annotation
homologous
IL_8C3A_069
NA
IL_9BH5_0661/A5/1694:1696,
1/A5/1918:1919		Single stack bend
geometric
IL_5J7L_032
NA
IL_9BH5_0681/A5/1739:1743,
1/A5/1900:1904		Triple sheared
homologous
IL_5TBW_067
NA
IL_9BH5_2231/A5/1748:1751,
1/A5/1885:1895		No text annotation
IL_9BH5_0691/A5/1754:1756,
1/A5/1880:1882		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_9BH5_0701/A5/1762:1763,
1/A5/1872:1874		Single bulged C
homologous
IL_8C3A_075
NA
IL_9BH5_0711/A5/1763:1764,
1/A5/1870:1872		Single stack bend
geometric
IL_5TBW_070
NA
IL_9BH5_0721/A5/1787:1791,
1/A5/1840:1845		No text annotation
homologous
IL_8C3A_077
NA
IL_9BH5_0731/A5/1792:1793,
1/A5/1837:1839		Single bulged U
geometric
IL_6MWN_006
IL_97561.6
IL_9BH5_0741/A5/1795:1800,
1/A5/1830:1835		No text annotation
IL_9BH5_0751/A5/1804:1810,
1/A5/1820:1826		No text annotation
homologous
IL_8C3A_079
NA
IL_9BH5_0761/A5/1976:1982,
1/A5/2449:2452		No text annotation
homologous
IL_5TBW_074
NA
IL_9BH5_0771/A5/1985:1987,
1/A5/2444:2446		Isolated cWH basepair
geometric
IL_4J50_003
IL_10892.3
IL_9BH5_0781/A5/1988:1990,
1/A5/2441:2443		No text annotation
homologous
IL_8C3A_081
NA
IL_9BH5_0791/A5/1991:1994,
1/A5/2439:2440		Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_9BH5_2241/A5/1991:1999,
1/A5/2436:2440		No text annotation
homologous
IL_8C3A_484
NA
IL_9BH5_0801/A5/1994:1999,
1/A5/2436:2439		Intercalated tWH
geometric
IL_5TBW_077
NA
IL_9BH5_0811/A5/2011:2016,
1/A5/2021:2027		tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA
IL_9BH5_0821/A5/2033:2035,
1/A5/2210:2212		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_9BH5_0831/A5/2040:2041,
1/A5/2202:2205		No text annotation
homologous
IL_8C3A_086
NA
IL_9BH5_0841/A5/2232:2233,
1/A5/2426:2428		Single bulged A
homologous
IL_5TBW_082
NA
IL_9BH5_0851/A5/2260:2265,
1/A5/2276:2283		Kink-turn related
homologous
IL_5TBW_083
NA
IL_9BH5_0861/A5/2299:2302,
1/A5/2348:2349		No text annotation
homologous
IL_8C3A_089
NA
IL_9BH5_0871/A5/2303:2304,
1/A5/2344:2347		Major groove intercalation
homologous
IL_5TBW_085
NA
IL_9BH5_0881/A5/2307:2313,
1/A5/2338:2341		No text annotation
IL_9BH5_0891/A5/2314:2319,
1/A5/2332:2337		No text annotation
geometric
IL_4QLM_002
IL_74322.2
IL_9BH5_0901/A5/2321:2323,
1/A5/2328:2330		Isolated non-canonical cWW pair
geometric
IL_3SZX_002
IL_71625.4
IL_9BH5_0911/A5/2379:2380,
1/A5/2410:2413		No text annotation
homologous
IL_8C3A_094
NA
IL_9BH5_0921/A5/2380:2391,
1/A5/2407:2410		No text annotation
geometric
IL_5TBW_090
NA
IL_9BH5_0931/A5/2394:2396,
1/A5/2402:2404		Isolated non-canonical cWW pair
geometric
IL_5ZTM_002
IL_71625.4
IL_9BH5_0951/A5/2494:2497,
1/A5/3098:3100		No text annotation
homologous
IL_8C3A_096
NA
IL_9BH5_0961/A5/2499:2501,
1/A5/3093:3096		Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_9BH5_0971/A5/2512:2514,
1/A5/2923:2924		Single bulged U
homologous
IL_8C3A_098
NA
IL_9BH5_0981/A5/2515:2516,
1/A5/2919:2922		Minor groove platform
homologous
IL_5TBW_094
NA
IL_9BH5_0991/A5/2526:2528,
1/A5/2716:2719		Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_9BH5_1001/A5/2625:2631,
1/A5/2696:2699		No text annotation
homologous
IL_8C3A_106
NA
IL_9BH5_1021/A5/2671:2673,
1/A5/2685:2687		Isolated non-canonical cWW pair
geometric
IL_4J50_002
IL_01003.5
IL_9BH5_1031/A5/2726:2727,
1/A5/2737:2739		Single bulged A
homologous
IL_8C3A_107
NA
IL_9BH5_1051/A5/2778:2780,
1/A5/2798:2802		Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA
IL_9BH5_1061/A5/2826:2828,
1/A5/2852:2853		Single bulged A
geometric
IL_4V88_399
NA
IL_9BH5_1071/A5/2830:2833,
1/A5/2847:2850		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_9BH5_1081/A5/2881:2883,
1/A5/2900:2901		Single stack bend
geometric
IL_5TBW_070
NA
IL_9BH5_1091/A5/2883:2885,
1/A5/2899:2900		Single bulged U
geometric
IL_4LFB_014
IL_97561.6
IL_9BH5_1101/A5/2935:2936,
1/A5/2977:2979		Major groove platform
geometric
IL_5TBW_102
NA
IL_9BH5_1111/A5/2936:2938,
1/A5/2975:2977		Isolated non-canonical cWW pair
homologous
IL_5TBW_103
NA
IL_9BH5_1121/A5/2938:2940,
1/A5/2974:2975		Major groove platform
geometric
IL_5TBW_104
NA
IL_9BH5_1131/A5/2940:2942,
1/A5/2970:2974		Major groove minor groove platform with extra cWW
homologous
IL_8C3A_113
NA
IL_9BH5_1141/A5/2947:2951,
1/A5/2961:2965		No text annotation
homologous
IL_8C3A_114
NA
IL_9BH5_1151/A5/2988:2989,
1/A5/3061:3063		Major groove platform
homologous
IL_8C3A_115
NA
IL_9BH5_1161/A5/2991:2993,
1/A5/3055:3059		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_9BH5_1171/A5/2993:2994,
1/A5/3052:3055		No text annotation
homologous
IL_8C3A_117
NA
IL_9BH5_1181/A5/3001:3003,
1/A5/3024:3026		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_9BH5_2251/A5/3001:3005,
1/A5/3020:3026		No text annotation
IL_9BH5_1191/A5/3003:3005,
1/A5/3020:3024		No text annotation
IL_9BH5_1201/A5/3030:3032,
1/A5/3038:3040		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_9BH5_1211/A5/3072:3073,
1/A5/3082:3084		Single bulged A
geometric
IL_7RQB_101
NA
IL_9BH5_1221/A5/3112:3114,
1/A5/3262:3264		Isolated non-canonical cWW pair
geometric
IL_4J50_002
IL_01003.5
IL_9BH5_1231/A5/3117:3120,
1/A5/3252:3259		Double sheared
homologous
IL_8P9A_342
IL_58355.3
IL_9BH5_1241/A5/3125:3127,
1/A5/3153:3155		Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_9BH5_1251/A5/3131:3138,
1/A5/3143:3149		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_9BH5_1261/A5/3159:3164,
1/A5/3204:3208		No text annotation
IL_9BH5_1271/A5/3166:3172,
1/A5/3197:3202		No text annotation
IL_9BH5_1281/A5/3176:3177,
1/A5/3190:3193		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_9BH5_1291/A5/3215:3220,
1/A5/3240:3245		UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_9BH5_1301/A5/3273:3275,
1/A5/3400:3402		Isolated non-canonical cWW pair
geometric
IL_5TBW_008
NA
IL_9BH5_1311/A5/3283:3285,
1/A5/3390:3392		Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_9BH5_2261/A5/3291:3299,
1/A5/3316:3323		No text annotation
IL_9BH5_1321/A5/3330:3333,
1/A5/3370:3374		No text annotation
IL_9BH5_1331/A5/3336:3340,
1/A5/3365:3367		No text annotation
IL_9BH5_1361/A5/3411:3414,
1/A5/3422:3425		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_9BH5_1371/A5/3437:3438,
1/A5/3493:3495		Single bulged U
geometric
IL_6UFG_004
IL_97561.6
IL_9BH5_1381/A5/3440:3442,
1/A5/3487:3491		Isolated non-canonical cWW with bulges
geometric
IL_4PKD_001
IL_68118.5
IL_9BH5_1391/A5/3444:3450,
1/A5/3480:3485		No text annotation
IL_9BH5_1401/A5/3452:3454,
1/A5/3477:3478		Single bulged U
homologous
IL_8C3A_140
NA
IL_9BH5_1411/A5/3454:3457,
1/A5/3474:3477		Double sheared
geometric
IL_4V9F_100
IL_58355.3
IL_9BH5_1421/A7/15:16,
1/A7/62:64		Single bulged A
homologous
IL_8C3A_143
NA
IL_9BH5_1431/A7/21:27,
1/A7/52:57		Minor groove platform related
homologous
IL_8C3A_144
NA
IL_9BH5_1441/A7/28:29,
1/A7/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
NA
IL_9BH5_1451/A7/32:36,
1/A7/41:45		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_9BH5_1461/A7/71:78,
1/A7/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_9BH5_1471/A7/79:81,
1/A7/95:97		Isolated non-canonical cWW pair
geometric
IL_5TBW_034
NA
IL_9BH5_1481/A7/82:85,
1/A7/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_9BH5_1491/A8/44:64,
1/A8/94:98		No text annotation
geometric
IL_5TBW_144
NA
IL_9BH5_1501/A8/64:66,
1/A8/91:94		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_9BH5_1511/B2/23:25,
1/B2/577:579		Isolated non-canonical cWW pair
geometric
IL_4E59_001
IL_01003.5
IL_9BH5_1521/B2/38:41,
1/B2/444:448		Double sheared
geometric
IL_4WF9_016
IL_58355.3
IL_9BH5_1531/B2/42:48,
1/B2/411:413		No text annotation
homologous
IL_8C3A_395
NA
IL_9BH5_1541/B2/50:52,
1/B2/408:409		Minor groove platform
homologous
IL_8C3A_396
NA
IL_9BH5_1551/B2/103:106,
1/B2/282:283		Multiple bulged bases
homologous
IL_8C3A_400
NA
IL_9BH5_1561/B2/108:111,
1/B2/278:280		Minor groove platform with extra cWW
geometric
IL_7RQB_031
NA
IL_9BH5_1571/B2/127:133,
1/B2/149:156		No text annotation
homologous
IL_8C3A_402
NA
IL_9BH5_1581/B2/134:136,
1/B2/146:148		Isolated cWH basepair
geometric
IL_3CZW_001
IL_10892.3
IL_9BH5_1591/B2/188:191,
1/B2/241:246		No text annotation
IL_9BH5_1611/B2/293:298,
1/B2/328:335		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_9BH5_1621/B2/300:303,
1/B2/325:326		No text annotation
geometric
IL_5Y58_001
IL_37738.1
IL_9BH5_1631/B2/343:345,
1/B2/356:361		No text annotation
homologous
IL_8C3A_412
NA
IL_9BH5_1641/B2/369:371,
1/B2/386:388		Isolated cWH basepair
homologous
IL_8C3A_413
NA
IL_9BH5_1651/B2/391:393,
1/B2/400:402		Isolated non-canonical cWW pair
homologous
IL_8C3A_414
NA
IL_9BH5_1661/B2/419:421,
1/B2/441:442		Single bulged U
homologous
IL_4V88_407
NA
IL_9BH5_1671/B2/423:427,
1/B2/438:439		C-loop
geometric
IL_5J7L_018
NA
IL_9BH5_1681/B2/427:428,
1/B2/436:438		Single bulged G
homologous
IL_8C3A_417
NA
IL_9BH5_1691/B2/492:495,
1/B2/509:512		Tandem non-canonical cWW pairs
geometric
IL_6MWN_005
IL_71194.3
IL_9BH5_1701/B2/526:533,
1/B2/563:564		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_9BH5_1711/B2/533:535,
1/B2/562:563		Single bulged U
homologous
IL_8C3A_424
NA
IL_9BH5_1721/B2/538:544,
1/B2/551:559		Kink-turn related
homologous
IL_8C3A_425
NA
IL_9BH5_1731/B2/592:598,
1/B2/1063:1064		No text annotation
homologous
IL_8C3A_426
NA
IL_9BH5_1741/B2/600:602,
1/B2/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_427
NA
IL_9BH5_1751/B2/603:607,
1/B2/933:937		tSH-tWH-tHS
homologous
IL_8C3A_428
NA
IL_9BH5_2311/B2/714:715,
1/B2/769:772		No text annotation
homologous
IL_8CRE_428
IL_73108.3
IL_9BH5_1781/B2/716:718,
1/B2/766:768		Isolated non-canonical cWW pair
homologous
IL_8C3A_431
NA
IL_9BH5_1801/B2/829:830,
1/B2/927:930		Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_9BH5_2271/B2/832:834,
1/B2/922:925		Isolated cWH basepair
homologous
IL_8C3A_510
NA
IL_9BH5_1821/B2/835:839,
1/B2/918:921		Tandem non-canonical cWW pairs
homologous
IL_4V88_430
NA
IL_9BH5_1831/B2/839:843,
1/B2/915:918		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_9BH5_1841/B2/850:853,
1/B2/889:892		Tandem non-canonical cWW pairs
homologous
IL_8C3A_439
NA
IL_9BH5_1851/B2/860:864,
1/B2/875:882		Kink-turn
homologous
IL_4V88_434
NA
IL_9BH5_1861/B2/950:955,
1/B2/979:981		No text annotation
homologous
IL_8C3A_441
NA
IL_9BH5_1871/B2/955:959,
1/B2/975:979		tSH-tWH-tHS
geometric
IL_4V88_436
NA
IL_9BH5_1881/B2/999:1002,
1/B2/1053:1060		No text annotation
IL_9BH5_1891/B2/1006:1009,
1/B2/1033:1036		Tandem non-canonical cWW pairs
homologous
IL_8C3A_444
NA
IL_9BH5_1901/B2/1013:1014,
1/B2/1027:1029		Single bulged G
geometric
IL_3SUX_001
IL_28408.3
IL_9BH5_1911/B2/1070:1077,
1/B2/1088:1093		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_9BH5_1921/B2/1105:1106,
1/B2/1586:1588		Single bulged A
homologous
IL_8C3A_447
NA
IL_9BH5_1931/B2/1108:1110,
1/B2/1583:1584		Single bulged G
homologous
IL_8C3A_448
NA
IL_9BH5_1941/B2/1116:1119,
1/B2/1573:1577		C-loop
homologous
IL_8C3A_449
NA
IL_9BH5_1951/B2/1132:1134,
1/B2/1420:1422		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_9BH5_1961/B2/1137:1138,
1/B2/1415:1417		Minor groove platform
homologous
IL_4V88_445
NA
IL_9BH5_1971/B2/1172:1174,
1/B2/1404:1406		Isolated non-canonical cWW pair
geometric
IL_4KYY_001
IL_71625.4
IL_9BH5_1991/B2/1193:1195,
1/B2/1208:1210		Other IL
homologous
IL_8C3A_454
NA
IL_9BH5_2001/B2/1227:1229,
1/B2/1396:1397		Single bulged U
homologous
IL_8C3A_455
NA
IL_9BH5_2011/B2/1231:1235,
1/B2/1392:1394		No text annotation
homologous
IL_8C3A_456
NA
IL_9BH5_2291/B2/1231:1237,
1/B2/1386:1394		No text annotation
homologous
IL_8P9A_439
IL_99893.2
IL_9BH5_2021/B2/1235:1237,
1/B2/1386:1392		Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_9BH5_2031/B2/1239:1240,
1/B2/1382:1384		Single bulged A
homologous
IL_8C3A_458
NA
IL_9BH5_2041/B2/1249:1251,
1/B2/1282:1284		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_9BH5_2051/B2/1304:1307,
1/B2/1335:1338		Minor groove platform
homologous
IL_4V88_456
NA
IL_9BH5_2061/B2/1431:1433,
1/B2/1486:1488		Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_71625.4
IL_9BH5_2301/B2/1436:1443,
1/B2/1475:1483		No text annotation
homologous
IL_8P9A_448
IL_91698.1
IL_9BH5_2081/B2/1451:1454,
1/B2/1465:1468		Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_9BH5_2091/B2/1496:1501,
1/B2/1522:1527		No text annotation
geometric
IL_4V88_462
NA
IL_9BH5_2101/B2/1592:1594,
1/B2/1718:1721		No text annotation
homologous
IL_8C3A_470
NA
IL_9BH5_2111/B2/1594:1597,
1/B2/1714:1718		No text annotation
geometric
IL_4V88_464
NA
IL_9BH5_2121/B2/1598:1600,
1/B2/1711:1713		Isolated non-canonical cWW pair
homologous
IL_8C3A_472
NA
IL_9BH5_2131/B2/1600:1603,
1/B2/1707:1711		No text annotation
homologous
IL_8CRE_469
IL_73099.1
IL_9BH5_2141/B2/1609:1612,
1/B2/1698:1701		Double sheared
homologous
IL_8C3A_475
NA
IL_9BH5_2151/B2/1612:1614,
1/B2/1697:1698		Single bulged U
geometric
IL_4V88_469
NA
IL_9BH5_2161/B2/1621:1623,
1/B2/1688:1690		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_9BH5_2171/B2/1625:1628,
1/B2/1683:1686		Double sheared
homologous
IL_8C3A_478
NA
IL_9BH5_2181/B2/1634:1638,
1/B2/1673:1677		Triple sheared
homologous
IL_4V88_474
NA

Problematic loops

#loop idProblemSequence
IL_9BH5_012Isolated non-canonical cWW pair
IL_9BH5_019No text annotation
IL_9BH5_052No text annotation
IL_9BH5_067Isolated non-canonical cWW pair
IL_9BH5_094Isolated non-canonical cWW pair
IL_9BH5_101No text annotation
IL_9BH5_104Isolated cWS basepair
IL_9BH5_134Isolated non-canonical cWW pair
IL_9BH5_135No text annotation
IL_9BH5_160No text annotation
IL_9BH5_176No text annotation
IL_9BH5_177Major groove minor groove platform with extra cWW
IL_9BH5_179No text annotation
IL_9BH5_181No text annotation
IL_9BH5_198No text annotation
IL_9BH5_228No text annotation
IL_9BH5_207180 degree turn
IL_9BH5_219No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9BH5_0011/A5/112:116,
1/A5/153:159,
1/A5/269:273		No text annotation
J3_9BH5_0191/A5/188:192,
1/A5/208:222,
1/A5/234:240		No text annotation
J3_9BH5_0201/A5/346:362,
1/A5/369:375,
1/A8/20:24		No text annotation
J3_9BH5_0211/A5/375:382,
1/A5/409:410,
1/A8/19:20		No text annotation
geometric
J3_8VTW_036
NA
J3_9BH5_0221/A5/375:385,
1/A5/396:410,
1/A8/19:20		No text annotation
homologous
J3_8P9A_047
J3_17917.2
J3_9BH5_0231/A5/443:444,
1/A5/514:515,
1/A5/642:649		No text annotation
J3_9BH5_0021/A5/869:875,
1/A5/960:962,
1/A5/978:981		No text annotation
homologous
J3_8C3A_003
NA
J3_9BH5_0031/A5/884:886,
1/A5/918:922,
1/A5/947:950		No text annotation
homologous
J3_8C3A_004
NA
J3_9BH5_0241/A5/1040:1041,
1/A5/1116:1120,
1/A5/1147:1151		No text annotation
homologous
J3_8P9A_051
J3_84137.2
J3_9BH5_0041/A5/1544:1550,
1/A5/1950:1952,
1/A5/1964:1967		No text annotation
homologous
J3_8C3A_006
NA
J3_9BH5_0051/A5/1553:1556,
1/A5/1930:1936,
1/A5/1945:1947		No text annotation
homologous
J3_8C3A_007
NA
J3_9BH5_0251/A5/1591:1596,
1/A5/1667:1671,
1/A5/1688:1689		No text annotation
homologous
J3_8P9A_055
J3_94309.2
J3_9BH5_0261/A5/1603:1607,
1/A5/1616:1626,
1/A5/1655:1659		No text annotation
J3_9BH5_0271/A5/1701:1704,
1/A5/1723:1724,
1/A5/1906:1913		No text annotation
J3_9BH5_0281/A5/1725:1726,
1/A5/1735:1739,
1/A5/1904:1905		No text annotation
J3_9BH5_0061/A5/2536:2538,
1/A5/2617:2621,
1/A5/2703:2708		No text annotation
geometric
J3_8VTW_006
NA
J3_9BH5_0291/A5/2763:2765,
1/A5/2866:2877,
1/A5/2905:2910		No text annotation
homologous
J3_8C3A_056
NA
J3_9BH5_0071/A5/2776:2778,
1/A5/2802:2804,
1/A5/2813:2818		No text annotation
homologous
J3_5TBW_013
NA
J3_9BH5_0081/A5/2998:3001,
1/A5/3026:3028,
1/A5/3042:3048		No text annotation
homologous
J3_8P9A_063
J3_44047.2
J3_9BH5_0301/A5/3286:3289,
1/A5/3325:3330,
1/A5/3374:3389		No text annotation
J3_9BH5_0311/A7/9:14,
1/A7/65:66,
1/A7/109:110		No text annotation
homologous
J3_8P9A_066
J3_26985.2
J3_9BH5_0321/A8/44:45,
1/A8/58:64,
1/A8/94:98		No text annotation
homologous
J3_8C3A_060
NA
J3_9BH5_0331/B2/41:42,
1/B2/413:419,
1/B2/442:444		No text annotation
homologous
J3_8P9A_068
J3_58657.2
J3_9BH5_0341/B2/609:612,
1/B2/824:829,
1/B2/930:931		No text annotation
J3_9BH5_0351/B2/609:612,
1/B2/824:830,
1/B2/927:931		No text annotation
J3_9BH5_0361/B2/728:731,
1/B2/741:745,
1/B2/750:757		No text annotation
J3_9BH5_0101/B2/846:849,
1/B2/893:901,
1/B2/908:912		No text annotation
homologous
J3_4V88_033
NA
J3_9BH5_0121/B2/1120:1123,
1/B2/1537:1543,
1/B2/1565:1572		No text annotation
homologous
J3_4V88_035
NA
J3_9BH5_0131/B2/1127:1130,
1/B2/1424:1426,
1/B2/1530:1533		No text annotation
homologous
J3_8C3A_039
NA
J3_9BH5_0141/B2/1139:1146,
1/B2/1157:1168,
1/B2/1410:1414		No text annotation
homologous
J3_8C3A_040
NA
J3_9BH5_0151/B2/1174:1179,
1/B2/1222:1226,
1/B2/1398:1404		No text annotation
homologous
J3_4V88_038
NA
J3_9BH5_0161/B2/1242:1247,
1/B2/1286:1291,
1/B2/1375:1380		No text annotation
homologous
J3_4V88_039
NA
J3_9BH5_0371/B2/1252:1253,
1/B2/1262:1267,
1/B2/1276:1281		No text annotation
J3_9BH5_0171/B2/1293:1297,
1/B2/1344:1350,
1/B2/1364:1373		No text annotation
J3_9BH5_0181/B2/1426:1430,
1/B2/1489:1496,
1/B2/1527:1530		No text annotation
homologous
J3_4V88_041
NA
J4_9BH5_0011/A5/111:112,
1/A5/273:278,
1/A5/299:305,
1/A5/322:325		No text annotation
homologous
J4_8C3A_001
NA
J4_9BH5_0021/A5/188:192,
1/A5/208:216,
1/A5/220:222,
1/A5/234:240		No text annotation
J4_9BH5_0031/A5/1516:1522,
1/A5/1540:1541,
1/A5/1970:1973,
1/A5/2455:2456		No text annotation
homologous
J4_8C3A_003
NA
J4_9BH5_0041/A5/1557:1561,
1/A5/1585:1590,
1/A5/1690:1691,
1/A5/1922:1929		No text annotation
homologous
J4_8C3A_004
NA
J4_9BH5_0051/A5/1767:1768,
1/A5/1786:1787,
1/A5/1845:1846,
1/A5/1866:1867		No text annotation
homologous
J4_8C3A_005
NA
J4_9BH5_0061/A5/2234:2238,
1/A5/2250:2254,
1/A5/2289:2293,
1/A5/2420:2425		No text annotation
homologous
J4_8C3A_006
NA
J4_9BH5_0071/A5/2295:2297,
1/A5/2351:2352,
1/A5/2370:2379,
1/A5/2413:2418		No text annotation
homologous
J4_8C3A_007
NA
J4_9BH5_0081/A5/2766:2770,
1/A5/2824:2826,
1/A5/2853:2854,
1/A5/2863:2865		No text annotation
J4_9BH5_0091/A5/2766:2770,
1/A5/2824:2828,
1/A5/2852:2854,
1/A5/2863:2865		No text annotation
homologous
J4_8C3A_008
NA
J4_9BH5_0101/A5/3122:3125,
1/A5/3155:3156,
1/A5/3211:3213,
1/A5/3247:3250		No text annotation
J4_9BH5_0111/B2/89:97,
1/B2/289:291,
1/B2/337:341,
1/B2/363:364		No text annotation
homologous
J4_8P9A_021
J4_15241.3
J4_9BH5_0121/B2/598:600,
1/B2/940:945,
1/B2/986:997,
1/B2/1062:1063		No text annotation
homologous
J4_8P9A_022
J4_14595.2
J4_9BH5_0131/DA/7:10,
1/DA/25:27,
1/DA/43:49,
1/DA/65:66		tRNA junction
homologous
J4_1IL2_001
J4_95067.2
J5_9BH5_0011/A5/19:21,
1/A8/35:42,
1/A8/100:105,
1/A8/111:112,
1/A8/133:135		No text annotation
homologous
J5_8P9A_010
J5_27223.2
J5_9BH5_0021/A5/687:692,
1/A5/854:857,
1/A5/996:999,
1/A5/1439:1441,
1/A5/1496:1502		No text annotation
homologous
J5_8P9A_011
J5_08384.2
J5_9BH5_0031/A5/1999:2007,
1/A5/2031:2032,
1/A5/2213:2214,
1/A5/2218:2226,
1/A5/2434:2436		No text annotation
homologous
J5_8P9A_013
J5_99177.2
J5_9BH5_0041/A5/2502:2509,
1/A5/2927:2935,
1/A5/2979:2988,
1/A5/3063:3069,
1/A5/3087:3092		No text annotation
J5_9BH5_0051/A5/2519:2522,
1/A5/2723:2726,
1/A5/2739:2740,
1/A5/2762:2763,
1/A5/2910:2916		No text annotation
homologous
J5_8P9A_015
J5_96125.2
J5_9BH5_0061/B2/54:57,
1/B2/80:87,
1/B2/366:368,
1/B2/389:391,
1/B2/402:406		No text annotation
homologous
J5_8C3A_020
NA
J6_9BH5_0011/A5/21:26,
1/A5/57:67,
1/A5/74:78,
1/A5/105:109,
1/A5/327:337,
1/A8/32:35		No text annotation
J6_9BH5_0021/A5/704:707,
1/A5/732:736,
1/A5/743:747,
1/A5/765:768,
1/A5/804:805,
1/A5/838:842		No text annotation
J6_9BH5_0031/A5/2519:2522,
1/A5/2723:2726,
1/A5/2739:2740,
1/A5/2762:2765,
1/A5/2866:2877,
1/A5/2905:2916		No text annotation
J7_9BH5_0011/A5/1004:1009,
1/A5/1022:1023,
1/A5/1166:1169,
1/A5/1193:1198,
1/A5/1209:1213,
1/A5/1390:1391,
1/A5/1429:1434		No text annotation

Problematic loops

#loop idProblemSequence
J3_9BH5_009No text annotation
J3_9BH5_011No text annotation
J4_9BH5_014tRNA junction

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