HL_9BH5_011

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_011 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.1069

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9BH5|1|A5|U|388
9BH5|1|A5|G|389
9BH5|1|A5|A|390
9BH5|1|A5|A|391
9BH5|1|A5|G|392
9BH5|1|A5|A|393

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CP

Large ribosomal subunit protein uL22