HL_9BH5_016

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UCUCGAA

Length

7 nucleotides

Bulged bases

9BH5|1|A5|U|755, 9BH5|1|A5|A|758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_016 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.2967

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

9BH5|1|A5|U|753
9BH5|1|A5|C|754
9BH5|1|A5|U|755
9BH5|1|A5|C|756
9BH5|1|A5|G|757
9BH5|1|A5|A|758
9BH5|1|A5|A|759

Current chains

Chain A5

28S rRNA

Nearby chains