HL_9BH5_018
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_018 not in the Motif Atlas
- Homologous match to HL_5TBW_019
- Geometric discrepancy: 0.0871
- The information below is about HL_5TBW_019
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
9BH5|1|A5|G|899
9BH5|1|A5|G|900
9BH5|1|A5|A|901
9BH5|1|A5|A|902
9BH5|1|A5|A|903
9BH5|1|A5|C|904
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain AL
- Small ribosomal subunit protein uS17
- Chain AN
- Small ribosomal subunit protein uS15
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Cp
- Large ribosomal subunit protein eL43
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