HL_9BH5_029

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_029 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1145

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9BH5|1|A5|G|1527
9BH5|1|A5|U|1528
9BH5|1|A5|U|1529
9BH5|1|A5|C|1530
9BH5|1|A5|G|1531
9BH5|1|A5|A|1532
9BH5|1|A5|U|1533
9BH5|1|A5|C|1534
9BH5|1|A5|C|1535

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CR

Large ribosomal subunit protein eL19

Chain Cd

Large ribosomal subunit protein eL31