HL_9BH5_031

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_031 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.1325

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9BH5|1|A5|C|1609
9BH5|1|A5|G|1610
9BH5|1|A5|A|1611
9BH5|1|A5|A|1612
9BH5|1|A5|C|1613
9BH5|1|A5|G|1614

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CN

Large ribosomal subunit protein eL15

Chain Cj

Ribosomal protein L37