HL_9BH5_033

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9BH5|1|A5|U|1682, 9BH5|1|A5|U|1683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_033 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1135

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9BH5|1|A5|G|1675
9BH5|1|A5|U|1676
9BH5|1|A5|U|1677
9BH5|1|A5|A|1678
9BH5|1|A5|A|1679
9BH5|1|A5|U|1680
9BH5|1|A5|A|1681
9BH5|1|A5|U|1682
9BH5|1|A5|U|1683
9BH5|1|A5|C|1684

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CR

Large ribosomal subunit protein eL19

Chain CX

Large ribosomal subunit protein uL23B

Chain Cg

Large ribosomal subunit protein eL34