HL_9BH5_048

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9BH5|1|A5|A|2475, 9BH5|1|A5|A|2476, 9BH5|1|A5|C|2477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_048 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0493

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9BH5|1|A5|G|2472
9BH5|1|A5|G|2473
9BH5|1|A5|G|2474
9BH5|1|A5|A|2475
9BH5|1|A5|A|2476
9BH5|1|A5|C|2477
9BH5|1|A5|G|2478
9BH5|1|A5|G|2479
9BH5|1|A5|G|2480
9BH5|1|A5|C|2481

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain Ce

Large ribosomal subunit protein eL32