HL_9BH5_053

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GACGGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_053 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2086

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9BH5|1|A5|G|2785
9BH5|1|A5|A|2786
9BH5|1|A5|C|2787
9BH5|1|A5|G|2788
9BH5|1|A5|G|2789
9BH5|1|A5|A|2790
9BH5|1|A5|A|2791
9BH5|1|A5|A|2792
9BH5|1|A5|C|2793

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CJ

Large ribosomal subunit protein uL5B