HL_9BH5_054
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_054 not in the Motif Atlas
- Homologous match to HL_8C3A_058
- Geometric discrepancy: 0.1041
- The information below is about HL_8C3A_058
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
9BH5|1|A5|C|2805
9BH5|1|A5|A|2806
9BH5|1|A5|A|2807
9BH5|1|A5|A|2808
9BH5|1|A5|A|2809
9BH5|1|A5|G|2810
9BH5|1|A5|G|2811
9BH5|1|A5|G|2812
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CI
- Large ribosomal subunit protein uL16
- Chain CT
- Large ribosomal subunit protein eL21
- Chain Co
- Large ribosomal subunit protein eL42
- Chain DA
- Transfer RNA; tRNA
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