HL_9BH5_056

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_056 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.1109

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9BH5|1|A5|C|2856
9BH5|1|A5|G|2857
9BH5|1|A5|A|2858
9BH5|1|A5|A|2859
9BH5|1|A5|A|2860
9BH5|1|A5|G|2861

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CD

Large ribosomal subunit protein uL18

Chain CT

Large ribosomal subunit protein eL21

Chain Co

Large ribosomal subunit protein eL42