HL_9BH5_062

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_062 not in the Motif Atlas

Homologous match to HL_5TBW_065

Geometric discrepancy: 0.3678

The information below is about HL_5TBW_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9BH5|1|A5|C|3138
9BH5|1|A5|G|3139
9BH5|1|A5|A|3140
9BH5|1|A5|G|3141
9BH5|1|A5|A|3142
9BH5|1|A5|G|3143

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CH

Large ribosomal subunit protein uL6