HL_9BH5_064

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9BH5|1|A5|G|3229, 9BH5|1|A5|C|3233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_064 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0527

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9BH5|1|A5|C|3223
9BH5|1|A5|U|3224
9BH5|1|A5|G|3225
9BH5|1|A5|A|3226
9BH5|1|A5|A|3227
9BH5|1|A5|C|3228
9BH5|1|A5|G|3229
9BH5|1|A5|C|3230
9BH5|1|A5|C|3231
9BH5|1|A5|U|3232
9BH5|1|A5|C|3233
9BH5|1|A5|U|3234
9BH5|1|A5|A|3235
9BH5|1|A5|A|3236
9BH5|1|A5|G|3237

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CH

Large ribosomal subunit protein uL6

Chain CO

Large ribosomal subunit protein uL13

Chain Cm

Ubiquitin-ribosomal protein eL40 fusion protein