HL_9BH5_067

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GCAUACGAC

Length

9 nucleotides

Bulged bases

9BH5|1|A5|C|3415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_067 not in the Motif Atlas

Homologous match to HL_5TBW_070

Geometric discrepancy: 0.1026

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

9BH5|1|A5|G|3414
9BH5|1|A5|C|3415
9BH5|1|A5|A|3416
9BH5|1|A5|U|3417
9BH5|1|A5|A|3418
9BH5|1|A5|C|3419
9BH5|1|A5|G|3420
9BH5|1|A5|A|3421
9BH5|1|A5|C|3422

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain CP

Large ribosomal subunit protein uL22